Potential protein homologs
Description
The following list presents the potential protein homologs for RpoD using FASTA alignment tool. For all top hits, a bidirectional analysis was performed and those showing the same pair of proteins are considered to be potential orthologs.
The column Bidirectional best hit informs if RpoD was found to be best hit in the alignment with the protein of the respective organism.
RpoD
| Organism | Protein name | Identity | Similarity | Bidirectional best hit |
| Mycoplasma mycoides subsp mycoides | RpoD | 98.4% | 99.8% | Yes |
| Mycoplasma genitalium | SigA | 36.5% | 64.4% | Yes |
| Mycoplasma pneumoniae | SigA | 36.2% | 62.3% | Yes |
| Mesoplasma florum | Mfl270 | 65.0% | 83.4% | Yes |
| Acholeplasma laidlawii | RpoD | 39.7% | 65.9% | Yes |
| Bacillus subtilis | SigA | 42.2% | 68.7% | Yes |
| Listeria monocytogenes | SigA | 42.9% | 66.4% | Yes |
| Streptococcus pneumoniae | SigA | 46.6% | 71.3% | Yes |
| Clostridium acetobutylicum | SigA | 38.3% | 61.3% | Yes |
| Corynebacterium glutamicum | SigA | 35.1% | 60.4% | Yes |
| Streptomyces coelicolor | HrdB | 41.4% | 64.6% | Yes |
| Escherichia coli | RpoD | 46.4% | 68.5% | Yes |
| Prochlorococcus marinus | SigA | 33.3% | 59.1% | Yes |
| Synechococcus elongatus | SigA1 | 35.3% | 60.2% | Yes |
| Synechocystis sp | SigA | 41.0% | 69.0% | Yes |
| Borrelia burgdorferi | RpoD | 34.4% | 63.7% | Yes |